J4_9SUM_002

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GCAAG*CGCC*GAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SUM|1|A|G|177
9SUM|1|A|C|178
9SUM|1|A|A|179
9SUM|1|A|A|180
9SUM|1|A|G|181
*
9SUM|1|A|C|197
9SUM|1|A|G|198
9SUM|1|A|C|199
9SUM|1|A|C|200
*
9SUM|1|A|G|204
9SUM|1|A|A|205
9SUM|1|A|G|206
*
9SUM|1|A|C|218
9SUM|1|A|G|219
9SUM|1|A|U|220
9SUM|1|A|A|221
9SUM|1|A|C|222

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L4-A

Chain a

Ribosomal protein L24