J4_9SUM_006

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.4

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

8

Unit IDs

9SUM|1|A|G|2045
9SUM|1|A|A|2046
9SUM|1|A|C|2047
9SUM|1|A|U|2048
9SUM|1|A|G|2049
*
9SUM|1|A|C|2061
9SUM|1|A|A|2062
9SUM|1|A|U|2063
9SUM|1|A|A|2064
9SUM|1|A|G|2065
*
9SUM|1|A|U|2101
9SUM|1|A|G|2102
9SUM|1|A|A|2103
9SUM|1|A|U|2104
9SUM|1|A|U|2105
*
9SUM|1|A|A|2232
9SUM|1|A|U|2233
9SUM|1|A|U|2234
9SUM|1|A|A|2235
9SUM|1|A|A|2236
9SUM|1|A|C|2237

Current chains

Chain A

25S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain D

60S ribosomal protein L2-A

Chain p

Small ribosomal subunit protein eS32

Chain r

60S ribosomal protein L43