J4_9SUM_011

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

9SUM|1|CA|A|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.5

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

5

Unit IDs

9SUM|1|CA|C|98
9SUM|1|CA|A|99
9SUM|1|CA|U|100
9SUM|1|CA|U|101
9SUM|1|CA|A|102
9SUM|1|CA|A|103
9SUM|1|CA|A|104
9SUM|1|CA|U|105
9SUM|1|CA|C|106
*
9SUM|1|CA|G|296
9SUM|1|CA|C|297
9SUM|1|CA|C|298
*
9SUM|1|CA|G|346
9SUM|1|CA|U|347
9SUM|1|CA|A|348
9SUM|1|CA|A|349
9SUM|1|CA|C|350
*
9SUM|1|CA|G|372
9SUM|1|CA|G|373

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZA

40S ribosomal protein S8

Chain ZD

40S ribosomal protein S11-A

Chain ZP

40S ribosomal protein S23

Chain w

40S ribosomal protein S4