J4_9SUM_012

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

9SUM|1|CA|A|612, 9SUM|1|CA|A|996, 9SUM|1|CA|C|998, 9SUM|1|CA|U|999, 9SUM|1|CA|A|1000, 9SUM|1|CA|U|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-cWW-F

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|A|611
9SUM|1|CA|A|612
9SUM|1|CA|G|613
*
9SUM|1|CA|C|945
9SUM|1|CA|G|946
9SUM|1|CA|A|947
9SUM|1|CA|A|948
9SUM|1|CA|A|949
9SUM|1|CA|G|950
*
9SUM|1|CA|C|991
9SUM|1|CA|C|992
9SUM|1|CA|A|993
9SUM|1|CA|U|994
9SUM|1|CA|A|995
9SUM|1|CA|A|996
9SUM|1|CA|A|997
9SUM|1|CA|C|998
9SUM|1|CA|U|999
9SUM|1|CA|A|1000
9SUM|1|CA|U|1001
9SUM|1|CA|G|1002
*
9SUM|1|CA|U|1073
9SUM|1|CA|U|1074

Current chains

Chain CA

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain ZD

40S ribosomal protein S11-A

Chain ZE

40S ribosomal protein S13

Chain ZF

Small ribosomal subunit protein uS11

Chain ZO

40S ribosomal protein S22

Chain ZP

40S ribosomal protein S23

Chain ZS

40S ribosomal protein S26

Chain p

Small ribosomal subunit protein eS32