J4_9SX2_002

3D structure

PDB id

9SX2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S Doxycycline Bound E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9SX2|1|A|C|183, 9SX2|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SX2|1|A|G|142
9SX2|1|A|A|143
9SX2|1|A|G|144
*
9SX2|1|A|C|178
9SX2|1|A|A|179
9SX2|1|A|U|180
9SX2|1|A|A|181
9SX2|1|A|A|182
9SX2|1|A|C|183
9SX2|1|A|G|184
*
9SX2|1|A|C|193
9SX2|1|A|C|194
9SX2|1|A|A|195
9SX2|1|A|A|196
9SX2|1|A|A|197
9SX2|1|A|G|198
*
9SX2|1|A|U|219
9SX2|1|A|G|220
9SX2|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20