J4_9SYH_004

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9SYH|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYH|1|a|C|268
9SYH|1|a|C|269
*
9SYH|1|a|G|370
9SYH|1|a|A|371
9SYH|1|a|G|372
9SYH|1|a|U|373
9SYH|1|a|A|374
9SYH|1|a|G|375
*
9SYH|1|a|U|399
9SYH|1|a|G|400
9SYH|1|a|A|401
9SYH|1|a|A|402
9SYH|1|a|U|403
9SYH|1|a|A|404
9SYH|1|a|U|405
9SYH|1|a|G|406
*
9SYH|1|a|C|421
9SYH|1|a|A|422
9SYH|1|a|A|423
9SYH|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28