J4_9SYH_006

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9SYH|1|a|U|653, 9SYH|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYH|1|a|C|601
9SYH|1|a|A|602
9SYH|1|a|A|603
9SYH|1|a|G|604
*
9SYH|1|a|C|624
9SYH|1|a|G|625
9SYH|1|a|A|626
9SYH|1|a|A|627
9SYH|1|a|G|628
*
9SYH|1|a|C|635
9SYH|1|a|G|636
9SYH|1|a|A|637
9SYH|1|a|G|638
*
9SYH|1|a|C|650
9SYH|1|a|G|651
9SYH|1|a|U|652
9SYH|1|a|U|653
9SYH|1|a|A|654
9SYH|1|a|A|655
9SYH|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15