J4_9SYH_007

3D structure

PDB id

9SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from deltaRlmE strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.89 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9SYH|1|a|G|1271, 9SYH|1|a|A|1272, 9SYH|1|a|U|1273, 9SYH|1|a|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYH|1|a|C|1270
9SYH|1|a|G|1271
9SYH|1|a|A|1272
9SYH|1|a|U|1273
9SYH|1|a|A|1274
9SYH|1|a|A|1275
9SYH|1|a|A|1276
*
9SYH|1|a|U|1294
9SYH|1|a|C|1295
*
9SYH|1|a|G|1645
9SYH|1|a|C|1646
9SYH|1|a|U|1647
9SYH|1|a|U|1648
*
9SYH|1|a|A|2009
9SYH|1|a|G|2010

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32