J4_9SYR_006

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

UC*GGUCAG*UC*GGCCGUA

Length

17 nucleotides

Bulged bases

9SYR|1|L1|C|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|U|2409
9SYR|1|L1|C|2410
*
9SYR|1|L1|G|2434
9SYR|1|L1|G|2435
9SYR|1|L1|U|2436
9SYR|1|L1|C|2437
9SYR|1|L1|A|2438
9SYR|1|L1|G|2439
*
9SYR|1|L1|U|2538
9SYR|1|L1|C|2539
*
9SYR|1|L1|G|2777
9SYR|1|L1|G|2778
9SYR|1|L1|C|2779
9SYR|1|L1|C|2780
9SYR|1|L1|G|2781
9SYR|1|L1|U|2782
9SYR|1|L1|A|2783

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L3

5.8S ribosomal RNA; 5.8S rRNA

Chain LB

60S ribosomal protein L38

Chain LC

60S ribosomal protein L39

Chain Li

60S ribosomal protein L19

Chain Lo

60S ribosomal protein L23a

Chain Lx

60S ribosomal protein L34