J4_9SYR_009

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|G|3634
9SYR|1|L1|A|3635
9SYR|1|L1|C|3636
9SYR|1|L1|PSU|3637
9SYR|1|L1|G|3638
*
9SYR|1|L1|C|3650
9SYR|1|L1|A|3651
9SYR|1|L1|A|3652
9SYR|1|L1|A|3653
9SYR|1|L1|G|3654
*
9SYR|1|L1|U|3690
9SYR|1|L1|G|3691
9SYR|1|L1|A|3692
9SYR|1|L1|U|3693
9SYR|1|L1|U|3694
*
9SYR|1|L1|A|3821
9SYR|1|L1|U|3822
9SYR|1|L1|G|3823
9SYR|1|L1|A|3824
9SYR|1|L1|A2M|3825
9SYR|1|L1|C|3826

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L37a

Chain La

60S ribosomal protein L8

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sq

60S ribosomal protein L41