J4_9SYR_015
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- UUAG*CGU*AAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 9SYR|1|S3|U|8, 9SYR|1|S3|U|47, 9SYR|1|S3|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9SYR_015 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.1995
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9SYR|1|S3|U|7
9SYR|1|S3|U|8
9SYR|1|S3|A|9
9SYR|1|S3|G|10
*
9SYR|1|S3|C|25
9SYR|1|S3|G|26
9SYR|1|S3|U|27
*
9SYR|1|S3|A|43
9SYR|1|S3|A|44
9SYR|1|S3|G|45
9SYR|1|S3|G|46
9SYR|1|S3|U|47
9SYR|1|S3|C|48
9SYR|1|S3|C|49
*
9SYR|1|S3|G|65
9SYR|1|S3|A|66
Current chains
- Chain S3
- tRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- 60S ribosomal protein L10
- Chain LO
- 60S ribosomal protein L11
- Chain Sd
- Small ribosomal subunit protein uS13
- Chain Sm
- 40S ribosomal protein S25
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