J4_9T0Y_004

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9T0Y|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T0Y|1|a|C|268
9T0Y|1|a|C|269
*
9T0Y|1|a|G|370
9T0Y|1|a|A|371
9T0Y|1|a|G|372
9T0Y|1|a|U|373
9T0Y|1|a|A|374
9T0Y|1|a|G|375
*
9T0Y|1|a|U|399
9T0Y|1|a|G|400
9T0Y|1|a|A|401
9T0Y|1|a|A|402
9T0Y|1|a|U|403
9T0Y|1|a|A|404
9T0Y|1|a|U|405
9T0Y|1|a|G|406
*
9T0Y|1|a|C|421
9T0Y|1|a|A|422
9T0Y|1|a|A|423
9T0Y|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28