J4_9T0Y_005

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T0Y|1|a|G|297
9T0Y|1|a|G|298
9T0Y|1|a|A|299
9T0Y|1|a|A|300
9T0Y|1|a|G|301
*
9T0Y|1|a|C|316
9T0Y|1|a|G|317
9T0Y|1|a|C|318
9T0Y|1|a|G|319
*
9T0Y|1|a|C|323
9T0Y|1|a|A|324
9T0Y|1|a|G|325
*
9T0Y|1|a|C|337
9T0Y|1|a|G|338
9T0Y|1|a|U|339
9T0Y|1|a|A|340
9T0Y|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24