J4_9T0Y_006

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9T0Y|1|a|U|653, 9T0Y|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T0Y|1|a|C|601
9T0Y|1|a|A|602
9T0Y|1|a|A|603
9T0Y|1|a|G|604
*
9T0Y|1|a|C|624
9T0Y|1|a|G|625
9T0Y|1|a|A|626
9T0Y|1|a|A|627
9T0Y|1|a|G|628
*
9T0Y|1|a|C|635
9T0Y|1|a|G|636
9T0Y|1|a|A|637
9T0Y|1|a|G|638
*
9T0Y|1|a|C|650
9T0Y|1|a|G|651
9T0Y|1|a|U|652
9T0Y|1|a|U|653
9T0Y|1|a|A|654
9T0Y|1|a|A|655
9T0Y|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15