J4_9T0Y_014

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T0Y|1|a|G|2643
9T0Y|1|a|G|2644
9T0Y|1|a|G|2645
9T0Y|1|a|C|2646
*
9T0Y|1|a|G|2674
9T0Y|1|a|A|2675
9T0Y|1|a|C|2676
*
9T0Y|1|a|G|2731
9T0Y|1|a|G|2732
9T0Y|1|a|A|2733
9T0Y|1|a|A|2734
9T0Y|1|a|G|2735
*
9T0Y|1|a|U|2769
9T0Y|1|a|G|2770
9T0Y|1|a|C|2771

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain j

Large ribosomal subunit protein uL14