J4_9T4R_001

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGUAACAC*GCU*AUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T4R|1|A|G|114
9T4R|1|A|A|115
9T4R|1|A|G|116
9T4R|1|A|U|117
9T4R|1|A|A|118
9T4R|1|A|A|119
9T4R|1|A|C|120
9T4R|1|A|A|121
9T4R|1|A|C|122
*
9T4R|1|A|G|246
9T4R|1|A|C|247
9T4R|1|A|U|248
*
9T4R|1|A|A|294
9T4R|1|A|U|295
9T4R|1|A|A|296
9T4R|1|A|G|297
*
9T4R|1|A|C|319
9T4R|1|A|C|320

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17