J4_9T4R_002

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAG*CAC

Length

22 nucleotides

Bulged bases

9T4R|1|A|U|183, 9T4R|1|A|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T4R|1|A|G|142
9T4R|1|A|A|143
9T4R|1|A|C|144
*
9T4R|1|A|G|178
9T4R|1|A|A|179
9T4R|1|A|U|180
9T4R|1|A|A|181
9T4R|1|A|A|182
9T4R|1|A|U|183
9T4R|1|A|A|184
9T4R|1|A|U|185
*
9T4R|1|A|A|206
9T4R|1|A|G|207
9T4R|1|A|U|208
9T4R|1|A|G|209
9T4R|1|A|A|210
9T4R|1|A|A|211
9T4R|1|A|A|212
9T4R|1|A|G|213
*
9T4R|1|A|C|227
9T4R|1|A|A|228
9T4R|1|A|C|229

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20