J4_9T4R_009

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9T4R|1|a|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T4R|1|a|G|1347
9T4R|1|a|U|1348
9T4R|1|a|U|1349
9T4R|1|a|U|1350
9T4R|1|a|C|1351
*
9T4R|1|a|G|1375
9T4R|1|a|G|1376
9T4R|1|a|U|1377
9T4R|1|a|U|1378
9T4R|1|a|A|1379
9T4R|1|a|G|1380
*
9T4R|1|a|C|1441
9T4R|1|a|C|1442
*
9T4R|1|a|G|1639
9T4R|1|a|C|1640
9T4R|1|a|C|1641
9T4R|1|a|C|1642
9T4R|1|a|G|1643
9T4R|1|a|U|1644
9T4R|1|a|A|1645
9T4R|1|a|C|1646

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain s

Large ribosomal subunit protein uL23