J4_9T5X_001

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9T5X|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T5X_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5337

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9T5X|1|A|G|115
9T5X|1|A|A|116
9T5X|1|A|G|117
9T5X|1|A|U|118
9T5X|1|A|A|119
9T5X|1|A|A|120
9T5X|1|A|U|121
9T5X|1|A|G|122
*
9T5X|1|A|U|239
9T5X|1|A|G|240
*
9T5X|1|A|C|286
9T5X|1|A|U|287
9T5X|1|A|A|288
9T5X|1|A|G|289
*
9T5X|1|A|C|311
9T5X|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17