J4_9T5X_006

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9T5X|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T5X_006 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2369

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9T5X|1|a|C|268
9T5X|1|a|C|269
*
9T5X|1|a|G|370
9T5X|1|a|A|371
9T5X|1|a|G|372
9T5X|1|a|U|373
9T5X|1|a|A|374
9T5X|1|a|G|375
*
9T5X|1|a|U|399
9T5X|1|a|G|400
9T5X|1|a|A|401
9T5X|1|a|A|402
9T5X|1|a|U|403
9T5X|1|a|A|404
9T5X|1|a|U|405
9T5X|1|a|G|406
*
9T5X|1|a|C|421
9T5X|1|a|A|422
9T5X|1|a|A|423
9T5X|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28