J4_9T5X_007

3D structure

PDB id

9T5X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-70 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T5X_007 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1034

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9T5X|1|a|G|297
9T5X|1|a|G|298
9T5X|1|a|A|299
9T5X|1|a|A|300
9T5X|1|a|G|301
*
9T5X|1|a|C|316
9T5X|1|a|G|317
9T5X|1|a|C|318
9T5X|1|a|G|319
*
9T5X|1|a|C|323
9T5X|1|a|A|324
9T5X|1|a|G|325
*
9T5X|1|a|C|337
9T5X|1|a|G|338
9T5X|1|a|U|339
9T5X|1|a|A|340
9T5X|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24