J4_9T61_001
3D structure
- PDB id
- 9T61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GAGUAAUG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9T61|1|A|U|118
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9T61_001 not in the Motif Atlas
- Homologous match to J4_6CZR_027
- Geometric discrepancy: 0.5538
- The information below is about J4_6CZR_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.2
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9T61|1|A|G|112
9T61|1|A|A|113
9T61|1|A|G|114
9T61|1|A|U|115
9T61|1|A|A|116
9T61|1|A|A|117
9T61|1|A|U|118
9T61|1|A|G|119
*
9T61|1|A|U|236
9T61|1|A|C|237
*
9T61|1|A|G|283
9T61|1|A|U|284
9T61|1|A|A|285
9T61|1|A|G|286
*
9T61|1|A|C|308
9T61|1|A|C|309
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain Q
- Small ribosomal subunit protein uS17
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