J4_9T6M_002

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9T6M|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9T6M_002 not in the Motif Atlas

Homologous match to J4_8B0X_002

Geometric discrepancy: 0.0634

The information below is about J4_8B0X_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T6M|1|A|G|142
9T6M|1|A|A|143
9T6M|1|A|G|144
*
9T6M|1|A|C|178
9T6M|1|A|A|179
9T6M|1|A|U|180
9T6M|1|A|A|181
9T6M|1|A|A|182
9T6M|1|A|C|183
9T6M|1|A|G|184
*
9T6M|1|A|C|193
9T6M|1|A|C|194
9T6M|1|A|A|195
9T6M|1|A|A|196
9T6M|1|A|A|197
9T6M|1|A|G|198
*
9T6M|1|A|U|219
9T6M|1|A|G|220
9T6M|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20