J4_9T6M_004

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9T6M|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T6M|1|a|C|268
9T6M|1|a|C|269
*
9T6M|1|a|G|370
9T6M|1|a|A|371
9T6M|1|a|G|372
9T6M|1|a|U|373
9T6M|1|a|A|374
9T6M|1|a|G|375
*
9T6M|1|a|U|399
9T6M|1|a|G|400
9T6M|1|a|A|401
9T6M|1|a|A|402
9T6M|1|a|U|403
9T6M|1|a|A|404
9T6M|1|a|U|405
9T6M|1|a|G|406
*
9T6M|1|a|C|421
9T6M|1|a|A|422
9T6M|1|a|A|423
9T6M|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28