J4_9T6M_006

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9T6M|1|a|U|653, 9T6M|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T6M|1|a|C|601
9T6M|1|a|A|602
9T6M|1|a|A|603
9T6M|1|a|G|604
*
9T6M|1|a|C|624
9T6M|1|a|G|625
9T6M|1|a|A|626
9T6M|1|a|A|627
9T6M|1|a|G|628
*
9T6M|1|a|C|635
9T6M|1|a|G|636
9T6M|1|a|A|637
9T6M|1|a|G|638
*
9T6M|1|a|C|650
9T6M|1|a|G|651
9T6M|1|a|U|652
9T6M|1|a|U|653
9T6M|1|a|A|654
9T6M|1|a|A|655
9T6M|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15