J4_9TEW_005

3D structure

PDB id

9TEW (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the initiating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9TEW|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEW_005 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2771

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TEW|1|a|C|268
9TEW|1|a|C|269
*
9TEW|1|a|G|370
9TEW|1|a|A|371
9TEW|1|a|G|372
9TEW|1|a|U|373
9TEW|1|a|A|374
9TEW|1|a|G|375
*
9TEW|1|a|U|399
9TEW|1|a|G|400
9TEW|1|a|A|401
9TEW|1|a|A|402
9TEW|1|a|U|403
9TEW|1|a|A|404
9TEW|1|a|U|405
9TEW|1|a|G|406
*
9TEW|1|a|C|421
9TEW|1|a|A|422
9TEW|1|a|A|423
9TEW|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28