J4_9TEX_001

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9TEX|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEX_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5958

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9TEX|1|A|G|115
9TEX|1|A|A|116
9TEX|1|A|G|117
9TEX|1|A|U|118
9TEX|1|A|A|119
9TEX|1|A|A|120
9TEX|1|A|U|121
9TEX|1|A|G|122
*
9TEX|1|A|U|239
9TEX|1|A|G|240
*
9TEX|1|A|C|286
9TEX|1|A|U|287
9TEX|1|A|A|288
9TEX|1|A|G|289
*
9TEX|1|A|C|311
9TEX|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

Small ribosomal subunit protein uS17