J4_9TEX_006

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEX_006 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.094

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9TEX|1|a|G|297
9TEX|1|a|G|298
9TEX|1|a|A|299
9TEX|1|a|A|300
9TEX|1|a|G|301
*
9TEX|1|a|C|316
9TEX|1|a|G|317
9TEX|1|a|C|318
9TEX|1|a|G|319
*
9TEX|1|a|C|323
9TEX|1|a|A|324
9TEX|1|a|G|325
*
9TEX|1|a|C|337
9TEX|1|a|G|338
9TEX|1|a|U|339
9TEX|1|a|A|340
9TEX|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24