J4_9TEX_010

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9TEX|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TEX_010 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2374

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9TEX|1|a|U|1313
9TEX|1|a|C|1314
*
9TEX|1|a|G|1338
9TEX|1|a|G|1339
9TEX|1|a|U|1340
9TEX|1|a|G|1341
9TEX|1|a|A|1342
9TEX|1|a|G|1343
*
9TEX|1|a|C|1404
9TEX|1|a|U|1405
*
9TEX|1|a|A|1597
9TEX|1|a|A|1598
9TEX|1|a|U|1599
9TEX|1|a|C|1600
9TEX|1|a|G|1601
9TEX|1|a|U|1602
9TEX|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23