J4_9TI6_001

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9TI6|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TI6_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2117

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TI6|1|A|C|271
9TI6|1|A|C|272
*
9TI6|1|A|G|416
9TI6|1|A|A|417
9TI6|1|A|G|418
9TI6|1|A|U|419
9TI6|1|A|A|420
9TI6|1|A|C|421
*
9TI6|1|A|G|445
9TI6|1|A|G|446
9TI6|1|A|A|447
9TI6|1|A|A|448
9TI6|1|A|U|449
9TI6|1|A|C|450
9TI6|1|A|U|451
9TI6|1|A|G|452
*
9TI6|1|A|U|467
9TI6|1|A|A|468
9TI6|1|A|A|469
9TI6|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28