J4_9TI7_001

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9TI7|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TI7_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2136

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TI7|1|A|C|271
9TI7|1|A|C|272
*
9TI7|1|A|G|416
9TI7|1|A|A|417
9TI7|1|A|G|418
9TI7|1|A|U|419
9TI7|1|A|A|420
9TI7|1|A|C|421
*
9TI7|1|A|G|445
9TI7|1|A|G|446
9TI7|1|A|A|447
9TI7|1|A|A|448
9TI7|1|A|U|449
9TI7|1|A|C|450
9TI7|1|A|U|451
9TI7|1|A|G|452
*
9TI7|1|A|U|467
9TI7|1|A|A|468
9TI7|1|A|A|469
9TI7|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28