J4_9TI7_008

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TI7_008 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.073

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9TI7|1|A|G|1799
9TI7|1|A|A|1800
9TI7|1|A|C|1801
9TI7|1|A|U|1802
9TI7|1|A|G|1803
*
9TI7|1|A|C|1815
9TI7|1|A|A|1816
9TI7|1|A|C|1817
9TI7|1|A|A|1818
9TI7|1|A|G|1819
*
9TI7|1|A|U|1854
9TI7|1|A|G|1855
9TI7|1|A|A|1856
9TI7|1|A|C|1857
*
9TI7|1|A|G|2002
9TI7|1|A|U|2003
9TI7|1|A|A|2004
9TI7|1|A|A|2005
9TI7|1|A|C|2006

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2