J4_9TI8_002

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TI8_002 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1092

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9TI8|1|A|C|340
9TI8|1|A|G|341
9TI8|1|A|A|342
9TI8|1|A|A|343
9TI8|1|A|U|344
*
9TI8|1|A|A|359
9TI8|1|A|A|360
9TI8|1|A|U|361
9TI8|1|A|C|362
*
9TI8|1|A|G|366
9TI8|1|A|A|367
9TI8|1|A|A|368
*
9TI8|1|A|U|380
9TI8|1|A|G|381
9TI8|1|A|U|382
9TI8|1|A|A|383
9TI8|1|A|G|384

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24