J4_9TI8_006

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9TI8|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TI8_006 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1401

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9TI8|1|A|U|1350
9TI8|1|A|C|1351
*
9TI8|1|A|G|1375
9TI8|1|A|G|1376
9TI8|1|A|U|1377
9TI8|1|A|U|1378
9TI8|1|A|A|1379
9TI8|1|A|G|1380
*
9TI8|1|A|C|1441
9TI8|1|A|C|1442
*
9TI8|1|A|G|1641
9TI8|1|A|C|1642
9TI8|1|A|C|1643
9TI8|1|A|C|1644
9TI8|1|A|G|1645
9TI8|1|A|U|1646
9TI8|1|A|A|1647

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23