J4_9TI9_006

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

9TI9|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TI9_006 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1485

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9TI9|1|A|U|1350
9TI9|1|A|C|1351
*
9TI9|1|A|G|1375
9TI9|1|A|G|1376
9TI9|1|A|U|1377
9TI9|1|A|U|1378
9TI9|1|A|A|1379
9TI9|1|A|G|1380
*
9TI9|1|A|C|1441
9TI9|1|A|C|1442
*
9TI9|1|A|G|1641
9TI9|1|A|C|1642
9TI9|1|A|C|1643
9TI9|1|A|C|1644
9TI9|1|A|G|1645
9TI9|1|A|U|1646
9TI9|1|A|A|1647

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23