J4_9TKO_003
3D structure
- PDB id
- 9TKO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S pre-initiation complex with IF2 bound (30S PIC-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9TKO|1|D1|C|576, 9TKO|1|D1|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TKO|1|D1|G|575
9TKO|1|D1|C|576
9TKO|1|D1|G|577
*
9TKO|1|D1|C|764
9TKO|1|D1|G|765
9TKO|1|D1|A|766
9TKO|1|D1|A|767
9TKO|1|D1|A|768
9TKO|1|D1|G|769
*
9TKO|1|D1|C|810
9TKO|1|D1|C|811
9TKO|1|D1|G|812
9TKO|1|D1|U|813
9TKO|1|D1|A|814
9TKO|1|D1|A|815
9TKO|1|D1|A|816
9TKO|1|D1|C|817
9TKO|1|D1|G|818
9TKO|1|D1|A|819
9TKO|1|D1|U|820
9TKO|1|D1|G|821
*
9TKO|1|D1|C|879
9TKO|1|D1|C|880
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AG
- Small ribosomal subunit protein uS8
- Chain AK
- Small ribosomal subunit protein uS12
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AP
- Small ribosomal subunit protein uS17
- Chain AU
- Small ribosomal subunit protein bS21
Coloring options: