J4_9TMI_004

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9TMI|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TMI_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2711

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TMI|1|a|C|268
9TMI|1|a|C|269
*
9TMI|1|a|G|370
9TMI|1|a|A|371
9TMI|1|a|G|372
9TMI|1|a|U|373
9TMI|1|a|A|374
9TMI|1|a|G|375
*
9TMI|1|a|U|399
9TMI|1|a|G|400
9TMI|1|a|A|401
9TMI|1|a|A|402
9TMI|1|a|U|403
9TMI|1|a|A|404
9TMI|1|a|U|405
9TMI|1|a|G|406
*
9TMI|1|a|C|421
9TMI|1|a|A|422
9TMI|1|a|A|423
9TMI|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28