J4_9TMI_006

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9TMI|1|a|U|653, 9TMI|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TMI|1|a|C|601
9TMI|1|a|A|602
9TMI|1|a|A|603
9TMI|1|a|G|604
*
9TMI|1|a|C|624
9TMI|1|a|G|625
9TMI|1|a|A|626
9TMI|1|a|A|627
9TMI|1|a|G|628
*
9TMI|1|a|C|635
9TMI|1|a|G|636
9TMI|1|a|A|637
9TMI|1|a|G|638
*
9TMI|1|a|C|650
9TMI|1|a|G|651
9TMI|1|a|U|652
9TMI|1|a|U|653
9TMI|1|a|A|654
9TMI|1|a|A|655
9TMI|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15