J4_9TNL_004

3D structure

PDB id

9TNL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9TNL|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TNL_004 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2753

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.3

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TNL|1|a|C|268
9TNL|1|a|C|269
*
9TNL|1|a|G|370
9TNL|1|a|A|371
9TNL|1|a|G|372
9TNL|1|a|U|373
9TNL|1|a|A|374
9TNL|1|a|G|375
*
9TNL|1|a|U|399
9TNL|1|a|G|400
9TNL|1|a|A|401
9TNL|1|a|A|402
9TNL|1|a|U|403
9TNL|1|a|A|404
9TNL|1|a|U|405
9TNL|1|a|G|406
*
9TNL|1|a|C|421
9TNL|1|a|A|422
9TNL|1|a|A|423
9TNL|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28