J4_9TQA_006

3D structure

PDB id

9TQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9TQA|1|a|U|653, 9TQA|1|a|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TQA|1|a|C|601
9TQA|1|a|A|602
9TQA|1|a|A|603
9TQA|1|a|G|604
*
9TQA|1|a|C|624
9TQA|1|a|G|625
9TQA|1|a|A|626
9TQA|1|a|A|627
9TQA|1|a|G|628
*
9TQA|1|a|C|635
9TQA|1|a|G|636
9TQA|1|a|A|637
9TQA|1|a|G|638
*
9TQA|1|a|C|650
9TQA|1|a|G|651
9TQA|1|a|U|652
9TQA|1|a|U|653
9TQA|1|a|A|654
9TQA|1|a|A|655
9TQA|1|a|G|656

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15