J4_9TV2_003
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- (OMC)AAAUAU*AGG*(OMC)AUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 9TV2|1|L5|A|2356, 9TV2|1|L5|U|2359, 9TV2|1|L5|U|2818
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|OMC|2355
9TV2|1|L5|A|2356
9TV2|1|L5|A|2357
9TV2|1|L5|A|2358
9TV2|1|L5|U|2359
9TV2|1|L5|A|2360
9TV2|1|L5|U|2361
*
9TV2|1|L5|A|2379
9TV2|1|L5|G|2380
9TV2|1|L5|G|2381
*
9TV2|1|L5|OMC|2814
9TV2|1|L5|A|2815
9TV2|1|L5|U|2816
9TV2|1|L5|G|2817
9TV2|1|L5|U|2818
9TV2|1|L5|U|2819
*
9TV2|1|L5|A|3842
9TV2|1|L5|G|3843
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LP
- 60S ribosomal protein L17
- Chain LR
- 60S ribosomal protein L19
- Chain Ld
- 60S ribosomal protein L31
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