J4_9TV2_007
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|G|3620
9TV2|1|L5|A|3621
9TV2|1|L5|C|3622
9TV2|1|L5|PSU|3623
9TV2|1|L5|G|3624
*
9TV2|1|L5|C|3636
9TV2|1|L5|A|3637
9TV2|1|L5|A|3638
9TV2|1|L5|A|3639
9TV2|1|L5|G|3640
*
9TV2|1|L5|U|3676
9TV2|1|L5|G|3677
9TV2|1|L5|A|3678
9TV2|1|L5|U|3679
9TV2|1|L5|U|3680
*
9TV2|1|L5|A|3807
9TV2|1|L5|PSU|3808
9TV2|1|L5|G|3809
9TV2|1|L5|A|3810
9TV2|1|L5|A2M|3811
9TV2|1|L5|C|3812
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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