J4_9TV2_008
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(UY1)G
- Length
- 21 nucleotides
- Bulged bases
- 9TV2|1|L5|UY1|3804
- QA status
- Modified nucleotides: UY1
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|C|3682
9TV2|1|L5|U|3683
9TV2|1|L5|G|3684
*
9TV2|1|L5|C|3738
9TV2|1|L5|G|3739
*
9TV2|1|L5|C|3757
9TV2|1|L5|U|3758
9TV2|1|L5|U|3759
9TV2|1|L5|A|3760
9TV2|1|L5|A|3761
9TV2|1|L5|G|3762
9TV2|1|L5|G|3763
9TV2|1|L5|U|3764
9TV2|1|L5|A|3765
9TV2|1|L5|G|3766
*
9TV2|1|L5|U|3800
9TV2|1|L5|G|3801
9TV2|1|L5|A|3802
9TV2|1|L5|A|3803
9TV2|1|L5|UY1|3804
9TV2|1|L5|G|3805
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: