J4_9TZ5_003

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

9TZ5|1|a|U|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZ5|1|a|C|608
9TZ5|1|a|G|609
9TZ5|1|a|A|610
9TZ5|1|a|G|611
*
9TZ5|1|a|C|631
9TZ5|1|a|G|632
9TZ5|1|a|U|633
9TZ5|1|a|A|634
9TZ5|1|a|G|635
*
9TZ5|1|a|C|642
9TZ5|1|a|G|643
9TZ5|1|a|A|644
9TZ5|1|a|G|645
*
9TZ5|1|a|C|657
9TZ5|1|a|G|658
9TZ5|1|a|U|659
9TZ5|1|a|U|660
9TZ5|1|a|U|661
9TZ5|1|a|A|662
9TZ5|1|a|G|663

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein uL4

Chain z

Large ribosomal subunit protein bL35