J4_9TZ5_009

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9TZ5|1|a|U|1987

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZ5|1|a|C|1847
9TZ5|1|a|U|1848
9TZ5|1|a|G|1849
*
9TZ5|1|a|C|1921
9TZ5|1|a|G|1922
*
9TZ5|1|a|C|1940
9TZ5|1|a|C|1941
9TZ5|1|a|U|1942
9TZ5|1|a|A|1943
9TZ5|1|a|A|1944
9TZ5|1|a|G|1945
9TZ5|1|a|G|1946
9TZ5|1|a|U|1947
9TZ5|1|a|A|1948
9TZ5|1|a|G|1949
*
9TZ5|1|a|C|1983
9TZ5|1|a|G|1984
9TZ5|1|a|A|1985
9TZ5|1|a|A|1986
9TZ5|1|a|U|1987
9TZ5|1|a|G|1988

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2