J4_9TZE_001

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

9TZE|1|A|U|118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZE_001 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.5537

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9TZE|1|A|G|112
9TZE|1|A|A|113
9TZE|1|A|G|114
9TZE|1|A|U|115
9TZE|1|A|A|116
9TZE|1|A|A|117
9TZE|1|A|U|118
9TZE|1|A|G|119
*
9TZE|1|A|U|236
9TZE|1|A|C|237
*
9TZE|1|A|G|283
9TZE|1|A|U|284
9TZE|1|A|A|285
9TZE|1|A|G|286
*
9TZE|1|A|C|308
9TZE|1|A|C|309

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17