J4_9TZE_007
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CGAUAAU*AC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9TZE|1|a|G|1281, 9TZE|1|a|A|1282, 9TZE|1|a|U|1283, 9TZE|1|a|U|1662
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9TZE_007 not in the Motif Atlas
- Homologous match to J4_7A0S_004
- Geometric discrepancy: 0.1421
- The information below is about J4_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9TZE|1|a|C|1280
9TZE|1|a|G|1281
9TZE|1|a|A|1282
9TZE|1|a|U|1283
9TZE|1|a|A|1284
9TZE|1|a|A|1285
9TZE|1|a|U|1286
*
9TZE|1|a|A|1304
9TZE|1|a|C|1305
*
9TZE|1|a|G|1660
9TZE|1|a|C|1661
9TZE|1|a|U|1662
9TZE|1|a|U|1663
*
9TZE|1|a|A|2025
9TZE|1|a|G|2026
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain j
- Large ribosomal subunit protein uL22
- Chain m
- Large ribosomal subunit protein bL17
- Chain v
- Large ribosomal subunit protein bL32
Coloring options: