J4_9TZE_009

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UC*GGUGAG*CU*AACCGUA

Length

17 nucleotides

Bulged bases

9TZE|1|a|G|1351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZE_009 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.1916

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.2

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

9TZE|1|a|U|1323
9TZE|1|a|C|1324
*
9TZE|1|a|G|1348
9TZE|1|a|G|1349
9TZE|1|a|U|1350
9TZE|1|a|G|1351
9TZE|1|a|A|1352
9TZE|1|a|G|1353
*
9TZE|1|a|C|1414
9TZE|1|a|U|1415
*
9TZE|1|a|A|1612
9TZE|1|a|A|1613
9TZE|1|a|C|1614
9TZE|1|a|C|1615
9TZE|1|a|G|1616
9TZE|1|a|U|1617
9TZE|1|a|A|1618

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL23

Chain y

Large ribosomal subunit protein bL34