J4_9TZE_011

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9TZE_011 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0699

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9TZE|1|a|G|1786
9TZE|1|a|A|1787
9TZE|1|a|C|1788
9TZE|1|a|U|1789
9TZE|1|a|G|1790
*
9TZE|1|a|C|1802
9TZE|1|a|A|1803
9TZE|1|a|C|1804
9TZE|1|a|A|1805
9TZE|1|a|G|1806
*
9TZE|1|a|U|1841
9TZE|1|a|G|1842
9TZE|1|a|A|1843
9TZE|1|a|C|1844
*
9TZE|1|a|G|1991
9TZE|1|a|U|1992
9TZE|1|a|A|1993
9TZE|1|a|A|1994
9TZE|1|a|C|1995

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain o

Large ribosomal subunit protein uL2