J4_9UZK_004

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGGC*GCGG*CCACG*CCU

Length

16 nucleotides

Bulged bases

9UZK|1|z|C|576

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|z|A|525
9UZK|1|z|G|526
9UZK|1|z|G|527
9UZK|1|z|C|528
*
9UZK|1|z|G|562
9UZK|1|z|C|563
9UZK|1|z|G|564
9UZK|1|z|G|565
*
9UZK|1|z|C|573
9UZK|1|z|C|574
9UZK|1|z|A|575
9UZK|1|z|C|576
9UZK|1|z|G|577
*
9UZK|1|z|C|591
9UZK|1|z|C|592
9UZK|1|z|U|593

Current chains

Chain z

EMCV IRES

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain U

Small ribosomal subunit protein uS13